LAMPADALAboratório Multidisciplinar
Para Análise de DAdos


Ensino Courses
    Biochemistry 2011
    Molecular Biology
    Síntese e Processamento do RNA

Pesquisa Research
    Research Papers

Public Understanding of Science
    Divulgação científica


Prof. Francisco Prosdocimi

Website atualizado pela última vez em 23-08-2011

Link para o currículo lattes de Francisco Prosdocimi.

Spinning gland transcriptomics from two main clades of spiders (order: Araneae) - insights on their molecular, anatomical and behavioral evolution
PLoS One 2011 -- PLoS ONE 6(6): e21634. doi:10.1371/journal.pone.0021634.
Prosdocimi F, Bittencourt D, Da Silva FR, Kirst M, Motta PC, Rech EL
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Supplementary Information

Sequence variations of Env signal peptide alleles in different clinical stages of HIV infection.
Peptides. 2011 Jul 26. [Epub ahead of print] doi:10.1016/j.peptides.2011.07.014
da Silva JX, Franco OL, Lemos MA, Gondim MV, Prosdocimi F, Argañaraz ER
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The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae)
Mol Biol Rep. 2011 Jun 17. [Epub ahead of print]
Prosdocimi F, de Carvalho DC, de Almeida RN, Beheregaray LB.
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Survey of genome organization and gene content of Corynebacterium pseudotuberculosis
Microbiological Research 2010 May 30;165(4):312-20. Epub 2009 Aug 31.
D'Afonseca V, Prosdocimi F, Dorella FA, Pacheco LGC, Moraes PM, Pena I, Ortega JM, Teixeira S, Oliveira SC, Cosere EM, Oliveira LM, Oliveira GC, Meyer R, Miyoshi A, Azevedo V
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Initial Implementation of a comparative Data Analysis Ontology
Evolutionary Bioinformatics 2009:5 47-66
Prosdocimi F, Chisham B, Pontelli E, Thompson JD, Stoltzfus A
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A procedure to recruit members to enlarge protein family databases--the building of UECOG (UniRef-Enriched COG Database) as a model
Genet Mol Res. 2008 Sep 30;7(3):910-24.
Fernandes GR, Barbosa DV, Prosdocimi F, Pena IA, Santana-Santos L, Coelho Junior O, Barbosa-Silva A, Velloso HM, Mudado MA, Natale DA, Faria-Campos AC, Aguiar SC, Ortega JM
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Essential amino acid usage and evolutionary nutrigenomics of eukaryotes--insights into the differential usage of amino acids in protein domains and extra-domains.
Genet Mol Res. 2008 Sep 16;7(3):839-52.
Santana-Santos L, Prosdocimi F, Ortega JM
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About a preference for stop-resistant codons in eukaryotic genomes
BSB poster proceedings (2007), 138-48.
Prosdocimi F, Ortega JM
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The codon usage of Leucine, Serine and Arginine reveals evolutionary stability of proteomes and protein-coding genes
BSB poster proceedings (2007), 149-59.
Prosdocimi F, Ortega JM
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Effects of sample re-sequencing and trimming on the quality and size of assembled consensus
Genet Mol Res. 2007 6: 756-765.
Prosdocimi F, Lopes DAO, Peixoto FC, Ortega JM
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Sex-biased gene flow in African Americans but not in American Caucasians
Genet Mol Res. 2007 May 9;6(2):156-61.
Gonçalves VF, Prosdocimi F, Santos LS, Ortega JM, Pena SDJ
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A set of amino acids found to occur more frequently in human and fly than in plant and yeast proteomes consists of non-essential amino acids
Comp. Biol. Med: 2007 Feb;37(2):159-65.
Prosdocimi F, Mudado M, Ortega JM
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Efficient secondary database driven annotation using model organism sequences
In Silico Biol 6: 0034, 2006.
Faria-Campos AC, Campos SVA, Prosdocimi F, Franco GC, Franco GR, Ortega JM

Genetic algorithm for analysis of mutations in Parkinson's disease
Artif Intell Med, 35:227-41, 2005.
Smigrodski R, Goertzel B, Pennachin C, Coelho L, Prosdocimi F, Parker DW Jr
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Accessing optimal primer distance from insert
In Silico Biol 5:0043, 2005.
Prosdocimi F, Ortega JM

Diet as a pressure on the amino acid content of proteomes
Lec Not Comp Sci 3594:153-159, 2005.
Prosdocimi F, Ortega JM
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Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values
Gen Mol Res 3(4):483-92, 2004.
Prosdocimi F, Peixoto FC, Ortega JM
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Nucleic acid binding properties of SmZF1, a zinc finger protein of Schistosoma mansoni
Int J Parasitol. 34: 1211-9, 2004.
Calzavara-Silva CE, Prosdocimi F, Abath FGC, Pena SD, Franco GR
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DNA Sequences Base Calling by PHRED: Error Pattern Analysis
RTInfo 3: 107-10, 2003.
Prosdocimi F, Peixoto FC, Ortega JM
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Clustering of Schistosoma mansoni mRNA Sequences and Analysis of the Most Transcribed Genes: Implications in Metabolism and Biology of Different Developmental Stages
Mem Inst Oswaldo Cruz, Rio de Janeiro, Vol. 97(Suppl. I): 61-69, 2002.
Prosdocimi F, AC Faria-Campos, FC Peixoto, SDJ Pena, JM Ortega, GR Franco
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Instituto de Bioquímica MédicaCentro de Ciências da Sáude

Universidade Federal do Rio de Janeiro

Keywords: Biologia computacional, Bioinformática, Análises de Genomas, Divulgação científica

Prof. Francisco Prosdocimi